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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_52904178_52904926_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
52904178 - 52904926
Intron Length:
749

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAATATC
5'SS Class:
major
3'SS Sequence:
TCTCTCCCCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATAAA
U12 Branch Point Sequence:
TCTCTCCCCACA
Flanking Amino Acid:
TLDEATPTLTNQSPTVTLQS
Intron Amino Acid Position:
463

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
1
81.4
30.4
Major BPS
62
0.3
1
62.3
30.4
Major PPT
78.6
0.64
0.7
72.6
25.7
Minor 5ss
41.4
-1
2.9
54.5
36.8
Minor BPS
42.6
-0.5
2.1
57.29
42

Associated Gene:

Gene:
TAB1
Ensembl Gene ID:
ENSAPLG00000015131
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033403
52903663 - 52911755
8093