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Intron Name: Anas_platyrhynchos_platyrhynchos_1_52909519_52910009_R


Intron Information:

Intron Rank:
4

Intron Class:
major

Intron Phase:
0

Intron Coordinates:
52909519 - 52910009

Intron Length:
491

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
GAG|GTAATGTGG

5'SS Class:
major

3'SS Sequence:
TCTTGGGTTCCAG|G

3'SS Class:
major_PPT

U2 Branch Point Sequence:
TATTTAA

U12 Branch Point Sequence:
TCCCCCATAATC

Flanking Amino Acid:
KASLQSQLPEGVPHHQLPPQ

Intron Amino Acid Position:
167

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
77.5
0.65
1
63.2
43.6

Major BPS
79.5
0.73
0.9
70
36.9

Major PPT
74.8
0.56
1
64.9
45.7

Minor 5ss
36.2
-1.6
3.2
47.4
48

Minor BPS
57.3
0.21
1.7
64.54
41.3

Associated Gene:

Gene:
TAB1

Ensembl Gene ID:

Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

52904574 - 52911755
7182

52903663 - 52911755
8093