Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_52923498_52929796_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

52923498 - 52929796

Intron Length:

6299

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TGG|GTGAGCCCG

5'SS Class:

major

3'SS Sequence:

TTTCCCCCTCCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CCCTGAT

U12 Branch Point Sequence:

TCGCCCTGATGT

Flanking Amino Acid:

PHTLLRLLSWVFSIVVFGSI

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

72.2

0.52

1.1

53.2

45.5

Major BPS

66.4

0.41

1.1

56.9

40.5

Major PPT

0.74

0.7

74.2

30.9

Minor 5ss

32.3

-2

2.9

31.8

42.1

Minor BPS

45.8

-0.2

62.02

47.5

Associated Gene:

Gene:

SYNGR1

Ensembl Gene ID:

ENSAPLG00000028832

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000020884

52919946 - 52929895

9950