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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_52933478_52934201_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
52933478 - 52934201
Intron Length:
724

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGGGTGCC
5'SS Class:
major
3'SS Sequence:
CTTTTTTTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
AAATATTTATTT
Flanking Amino Acid:
MSHRKFSAPRH
Intron Amino Acid Position:
2

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73
0.54
1
63.5
36.3
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
94.5
1
0.6
88
29.4
Minor 5ss
27.3
-2.6
3.2
31.8
37.6
Minor BPS
49.6
0.05
1.7
65.44
39.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014599
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042275
52933475 - 52938816
5342
ENSAPLT00000023065
52933399 - 52939346
5948
ENSAPLT00000021816
52933475 - 52938816
5342