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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_52934395_52935025_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
52934395 - 52935025
Intron Length:
631

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTACGTATT
5'SS Class:
major
3'SS Sequence:
TGTCTTCTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAC
U12 Branch Point Sequence:
CTGGTTTTGACA
Flanking Amino Acid:
IVREVDRPGSKVNKKEVVEA
Intron Amino Acid Position:
72

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.8
0.49
1.1
76.1
39.6
Major BPS
86.5
0.91
0.8
77.4
37.4
Major PPT
85.4
0.8
0.8
77.2
37.1
Minor 5ss
42.8
-0.8
3.1
65.3
39.8
Minor BPS
54.6
0.14
1.4
60.48
40.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014599
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023065
52933399 - 52939346
5948
ENSAPLT00000021816
52933475 - 52938816
5342
ENSAPLT00000015254
52932531 - 52939346
6816
ENSAPLT00000042275
52933475 - 52938816
5342