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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_52936184_52936647_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
52936184 - 52936647
Intron Length:
464

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTGTC
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTGTCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
AGGAACTAAATT
Flanking Amino Acid:
QVIRVMAHTQMRLLPLRQKK
Intron Amino Acid Position:
174

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97
1.11
0.7
88.7
23.8
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
75.8
0.58
0.8
69
37
Minor 5ss
37.2
-1.4
3.3
52
45.2
Minor BPS
47
-0.1
1.8
60.92
42.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014599
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023065
52933399 - 52939346
5948
ENSAPLT00000021816
52933475 - 52938816
5342
ENSAPLT00000015254
52932531 - 52939346
6816
ENSAPLT00000042275
52933475 - 52938816
5342