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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_52936835_52937236_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
52936835 - 52937236
Intron Length:
402

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACCACA
5'SS Class:
major
3'SS Sequence:
TTTCCTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTAGCAA
U12 Branch Point Sequence:
GGATTAGCAACA
Flanking Amino Acid:
IGVTKGKGYKGVTSRWHTKK
Intron Amino Acid Position:
236

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1.2
71.6
40.2
Major BPS
54.1
0.1
1.4
66
40.9
Major PPT
90.5
0.91
0.6
88.7
20.5
Minor 5ss
45.2
-0.5
2.6
58.9
45.3
Minor BPS
40.7
-0.7
2.2
51.24
39.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014599
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023065
52933399 - 52939346
5948
ENSAPLT00000021816
52933475 - 52938816
5342
ENSAPLT00000015254
52932531 - 52939346
6816
ENSAPLT00000042275
52933475 - 52938816
5342