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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_52938360_52938633_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
52938360 - 52938633
Intron Length:
274

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTTGT
5'SS Class:
strong_major
3'SS Sequence:
ATCTCTCTCGTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTCAC
U12 Branch Point Sequence:
CTGTGCTCACCT
Flanking Amino Acid:
TKKRVLTLRKSLLVQTKRRA
Intron Amino Acid Position:
356

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.7
83.9
30.3
Major BPS
69.8
0.49
1.1
71.3
36.7
Major PPT
74.4
0.55
0.8
69.8
30.2
Minor 5ss
36.5
-1.5
2.9
49.7
46.6
Minor BPS
46.8
-0.1
2.2
67.53
49

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014599
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042275
52933475 - 52938816
5342
ENSAPLT00000023065
52933399 - 52939346
5948
ENSAPLT00000015254
52932531 - 52939346
6816