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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_53025880_53026327_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
53025880 - 53026327
Intron Length:
448

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTTAGCCCA
5'SS Class:
major
3'SS Sequence:
CCCGTCCCCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCCCAC
U12 Branch Point Sequence:
GTCCCCACAGCC
Flanking Amino Acid:
MRSVHALMELS
Intron Amino Acid Position:
2

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.4
0.41
1.2
56.3
42.4
Major BPS
49.9
-0
1.3
60.3
37.5
Major PPT
67.8
0.4
0.8
60.3
29.7
Minor 5ss
34.7
-1.7
2.8
38.8
40.1
Minor BPS
43.5
-0.5
2
54.45
42.8

Associated Gene:

Gene:
CBX7
Ensembl Gene ID:
ENSAPLG00000023146
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047498
53025443 - 53036157
10715