Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_53026415_53027493_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

53026415 - 53027493

Intron Length:

1079

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGGGCAGC

5'SS Class:

major

3'SS Sequence:

TTTCCGCCCTCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AGTTCAC

U12 Branch Point Sequence:

CAGAGTTCACCT

Flanking Amino Acid:

ESIRKKRVRKGKVEYLVKWK

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

74.8

0.59

63.1

43.4

Major BPS

66.1

0.4

1.1

69.1

37.9

Major PPT

76.7

0.6

0.8

73.7

31.3

Minor 5ss

32.9

-2

3.1

42.5

44.6

Minor BPS

38.9

-0.7

49.35

44.3

Associated Gene:

Gene:

CBX7

Ensembl Gene ID:

ENSAPLG00000023146

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000047498

53025443 - 53036157

10715

ENSAPLT00000030563

53025443 - 53037072

11630