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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_53027538_53031530_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
53027538 - 53031530
Intron Length:
3993

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTTGT
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTTCTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTATAT
U12 Branch Point Sequence:
TTTACTTTATAT
Flanking Amino Acid:
YLVKWKGWPPKYSTWEPEDH
Intron Amino Acid Position:
38

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.3
0.86
0.9
81.6
33.2
Major BPS
79.2
0.73
1
75.3
39.4
Major PPT
90.4
0.91
0.7
89
28.1
Minor 5ss
43.6
-0.7
2.9
58.5
40.3
Minor BPS
62.2
0.46
1.7
82.02
39.2

Associated Gene:

Gene:
CBX7
Ensembl Gene ID:
ENSAPLG00000023146
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030563
53025443 - 53037072
11630
ENSAPLT00000047498
53025443 - 53036157
10715