Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_53035557_53036037_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

53035557 - 53036037

Intron Length:

481

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GGA|GTGCGCAGT

5'SS Class:

weak_major

3'SS Sequence:

TCTCTTCATCCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TCTTCAT

U12 Branch Point Sequence:

CTCTCTTCATCC

Flanking Amino Acid:

QVAEGFFRDRTARGDGSYLC

Intron Amino Acid Position:

241

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

56.7

0.16

1.1

53.6

45.2

Major BPS

87.4

0.93

0.9

87.9

29.5

Major PPT

80.9

0.7

0.8

73.6

Minor 5ss

35.9

-1.6

3.2

44.4

Minor BPS

49.9

-0

1.8

61.83

44.1

Associated Gene:

Gene:

CBX7

Ensembl Gene ID:

ENSAPLG00000023146

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000047498

53025443 - 53036157

10715

ENSAPLT00000030563

53025443 - 53037072

11630