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Intron Name: Anas_platyrhynchos_platyrhynchos_1_53044907_53045052_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

53044907 - 53045052

Intron Length:

146

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAA|GTGAGTAGG

5'SS Class:

strong_major

3'SS Sequence:

CGGCTCCCCAAAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TTCTAAC

U12 Branch Point Sequence:

CCCCTTCTAACT

Flanking Amino Acid:

DSRLIAAFEQKERERELYGP

Intron Amino Acid Position:

146

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.3

0.71

0.9

71.6

40.2

Major BPS

84.6

0.86

0.8

83.9

22.3

Major PPT

53.6

0.08

51.9

31.7

Minor 5ss

31.4

-2.1

2.7

33.7

35.3

Minor BPS

48.2

-0

1.7

60.74

43.5

Associated Gene:

Gene:

CBX6

Ensembl Gene ID:

ENSAPLG00000021019

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000039917

53044394 - 53053863

9470

ENSAPLT00000027487

53044092 - 53053863

9772