Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_53045120_53051885_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

53045120 - 53051885

Intron Length:

6766

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAACTCTT

5'SS Class:

strong_major

3'SS Sequence:

CCCACCACCGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTCTGAC

U12 Branch Point Sequence:

CTCTCCCCACCA

Flanking Amino Acid:

GPKPKTFLLKARAQAEALHI

Intron Amino Acid Position:

169

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.6

0.79

1.1

81.8

38.5

Major BPS

69.1

0.47

60.7

37.6

Major PPT

61.8

0.27

0.9

54.1

29.1

Minor 5ss

45.7

-0.5

2.9

67.7

43.2

Minor BPS

45.7

-0.3

2.1

59.96

45.8

Associated Gene:

Gene:

CBX6

Ensembl Gene ID:

ENSAPLG00000021019

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000039917

53044394 - 53053863

9470

ENSAPLT00000027487

53044092 - 53053863

9772