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Intron Name: Anas_platyrhynchos_platyrhynchos_1_53063162_53063304_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

53063162 - 53063304

Intron Length:

143

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTGAGTCCT

5'SS Class:

strong_major

3'SS Sequence:

CCTTGCCATGTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCCTTAT

U12 Branch Point Sequence:

TCCTCCTTATCC

Flanking Amino Acid:

LQSRVAELEHGSPGYSPPDA

Intron Amino Acid Position:

265

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.2

0.78

0.9

73.2

37.4

Major BPS

78.8

0.72

67.9

40.1

Major PPT

68.4

0.41

0.9

62.5

33.6

Minor 5ss

31.6

-2.1

2.9

39.6

39.8

Minor BPS

69.3

0.59

1.6

73.85

43.3

Associated Gene:

Gene:

NPTXR

Ensembl Gene ID:

ENSAPLG00000016553

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000042228

53059370 - 53065151

5782

ENSAPLT00000022828

53059370 - 53065675

6306