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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_53069846_53070244_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
53069846 - 53070244
Intron Length:
399

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGAAGA
5'SS Class:
strong_major
3'SS Sequence:
TTGCTCGTTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TTCTGCTTAACT
Flanking Amino Acid:
KRLHSFPLIRHTDMPEEMRV
Intron Amino Acid Position:
25

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1
71.7
40.1
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
78.8
0.65
0.9
73
37.3
Minor 5ss
32.4
-2
2.9
32.3
42
Minor BPS
77.3
0.93
1.7
91.7
38.1

Associated Gene:

Gene:
DNAL4
Ensembl Gene ID:
ENSAPLG00000014021
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014599
53069774 - 53071703
1930