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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_53070329_53071538_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
53070329 - 53071538
Intron Length:
1210

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGTGGCC
5'SS Class:
major
3'SS Sequence:
TCATGTCCCTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
TCTGCCTCACCC
Flanking Amino Acid:
ACEKYATNNESAAKMIKEMM
Intron Amino Acid Position:
53

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.6
0.44
1.1
62.7
37.7
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
72.8
0.51
0.9
69.7
36.5
Minor 5ss
29.2
-2.4
3.7
41.9
45.1
Minor BPS
51.8
0.04
2
66.23
45.6

Associated Gene:

Gene:
DNAL4
Ensembl Gene ID:
ENSAPLG00000014021
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014599
53069774 - 53071703
1930