Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_53077542_53077864_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

53077542 - 53077864

Intron Length:

323

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAA|GTGAGTAGA

5'SS Class:

strong_major

3'SS Sequence:

CCGCTCCTCGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CCATCAC

U12 Branch Point Sequence:

TCACCCCCAATC

Flanking Amino Acid:

NYGQALFKPMKQSRDQETPM

Intron Amino Acid Position:

243

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.8

0.75

0.9

76.9

33.7

Major BPS

53.4

0.09

1.1

57.3

37.7

Major PPT

0.47

0.8

64.6

30.8

Minor 5ss

31.4

-2.1

2.7

33.6

35.4

Minor BPS

47.5

-0.2

1.9

58.05

40.5

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000014124

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000048376

53075880 - 53079981

4102

ENSAPLT00000014707

53075880 - 53079981

4102