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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_53078330_53078415_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
53078330 - 53078415
Intron Length:
86

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCCCC
5'SS Class:
strong_major
3'SS Sequence:
TCCCCCACGCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCGTCAC
U12 Branch Point Sequence:
TTGTCCCCCACG
Flanking Amino Acid:
KLAKTFFISPAGNVCFYGEC
Intron Amino Acid Position:
313

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
65.8
40.2
Major BPS
50
0
1.2
54.6
40.8
Major PPT
62.3
0.28
1
54.6
35.1
Minor 5ss
33.7
-1.9
3
42.6
44.4
Minor BPS
46.2
-0.4
2.3
60.38
47

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014124
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014707
53075880 - 53079981
4102
ENSAPLT00000048376
53075880 - 53079981
4102