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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_53079490_53079563_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
53079490 - 53079563
Intron Length:
74

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCCGC
5'SS Class:
strong_major
3'SS Sequence:
CCTCTTTCCTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAAAAAA
U12 Branch Point Sequence:
CCTTCCTGACAC
Flanking Amino Acid:
SILAPLQQCCSIKKSTYLRL
Intron Amino Acid Position:
457

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
1
63.1
43.4
Major BPS
47.9
-0.1
0.9
51.7
28.4
Major PPT
81.4
0.71
0.7
79.9
25.5
Minor 5ss
32.8
-2
3
41.9
44.9
Minor BPS
49
-0
1.9
60.18
44.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014124
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014707
53075880 - 53079981
4102