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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_53092607_53093180_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
53092607 - 53093180
Intron Length:
574

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTATGTGTC
5'SS Class:
major
3'SS Sequence:
GTTCCACCCGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTGAA
U12 Branch Point Sequence:
GGCTGCTGAAAG
Flanking Amino Acid:
TTISPRYQAMVHCGSIRQTA
Intron Amino Acid Position:
516

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
1
72.3
37.8
Major BPS
67
0.42
1.1
57.3
41.7
Major PPT
70.1
0.45
0.9
62.9
33.3
Minor 5ss
42.9
-0.8
3.1
52.3
45
Minor BPS
44.8
-0.5
2
47.29
45

Associated Gene:

Gene:
GTPBP1
Ensembl Gene ID:
ENSAPLG00000014138
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041611
53052787 - 53103727
50941
ENSAPLT00000027666
53090675 - 53103727
13053
ENSAPLT00000014732
53052787 - 53103727
50941
ENSAPLT00000046932
53090675 - 53104440
13766