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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_53093926_53094066_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
53093926 - 53094066
Intron Length:
141

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAAGGGCC
5'SS Class:
major
3'SS Sequence:
CTTTTGGGTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GAGTAAA
U12 Branch Point Sequence:
TTGAGTAAACCT
Flanking Amino Acid:
FQIDDTYSVPGVGTVVSGTT
Intron Amino Acid Position:
410

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1
68.8
38
Major BPS
49.8
-0
1.3
53.6
40.4
Major PPT
73.8
0.54
1.1
67.9
42.5
Minor 5ss
31
-2.2
3.5
43.1
44.2
Minor BPS
37
-0.9
2.2
56.68
46

Associated Gene:

Gene:
GTPBP1
Ensembl Gene ID:
ENSAPLG00000014138
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041611
53052787 - 53103727
50941
ENSAPLT00000027666
53090675 - 53103727
13053
ENSAPLT00000014732
53052787 - 53103727
50941
ENSAPLT00000046932
53090675 - 53104440
13766