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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_53094782_53096670_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
53094782 - 53096670
Intron Length:
1889

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAATCTT
5'SS Class:
strong_major
3'SS Sequence:
TTCACCCTTTAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTCAC
U12 Branch Point Sequence:
GCTGCCCTAACA
Flanking Amino Acid:
IDMCPANILQETLKLLQRLL
Intron Amino Acid Position:
323

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
80.2
34.3
Major BPS
72.3
0.55
1.2
77.4
37.4
Major PPT
69.3
0.43
1
72
32.8
Minor 5ss
34.1
-1.8
3.2
49.5
46.7
Minor BPS
59
0.28
1.8
68.79
43.3

Associated Gene:

Gene:
GTPBP1
Ensembl Gene ID:
ENSAPLG00000014138
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041611
53052787 - 53103727
50941
ENSAPLT00000027666
53090675 - 53103727
13053
ENSAPLT00000014732
53052787 - 53103727
50941
ENSAPLT00000046932
53090675 - 53104440
13766