About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_53096795_53097235_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
53096795 - 53097235
Intron Length:
441

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAGGTAGC
5'SS Class:
major
3'SS Sequence:
CTCCCCGCTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGACAT
U12 Branch Point Sequence:
GAACGCTGACAT
Flanking Amino Acid:
GHLPDFCMLMVGSNAGIVGM
Intron Amino Acid Position:
282

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.1
0.66
1
68.8
42.2
Major BPS
55.3
0.13
1.3
64.4
41.8
Major PPT
67.7
0.4
0.8
61.5
29
Minor 5ss
34.8
-1.7
3
42.1
39.8
Minor BPS
39.2
-0.7
2
51.09
41.9

Associated Gene:

Gene:
GTPBP1
Ensembl Gene ID:
ENSAPLG00000014138
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041611
53052787 - 53103727
50941
ENSAPLT00000027666
53090675 - 53103727
13053
ENSAPLT00000014732
53052787 - 53103727
50941
ENSAPLT00000046932
53090675 - 53104440
13766