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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_53097585_53098582_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
53097585 - 53098582
Intron Length:
998

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGAGC
5'SS Class:
strong_major
3'SS Sequence:
CTCTCCCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTTAC
U12 Branch Point Sequence:
CAGGTTTTACCA
Flanking Amino Acid:
RVGDNDFLEVRVAVVGNVDA
Intron Amino Acid Position:
165

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.2
0.83
0.9
73
38.2
Major BPS
68.8
0.47
1.2
63.4
44
Major PPT
81.8
0.71
0.7
72.9
31.9
Minor 5ss
27.2
-2.6
3
33.9
41.8
Minor BPS
46.7
-0.2
1.7
50.73
41.6

Associated Gene:

Gene:
GTPBP1
Ensembl Gene ID:
ENSAPLG00000014138
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046932
53090675 - 53104440
13766
ENSAPLT00000041611
53052787 - 53103727
50941
ENSAPLT00000027666
53090675 - 53103727
13053
ENSAPLT00000014732
53052787 - 53103727
50941