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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_53098764_53100512_R

Intron Information:

Intron Rank:
2
Intron Class:
major_hybrid
Intron Phase:
1
Intron Coordinates:
53098764 - 53100512
Intron Length:
1749

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
ACCCCACAACTAG|A
3'SS Class:
major_hybrid
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
GTCTCCTCAACC
Flanking Amino Acid:
ETIYVIGQGSDGTEYGLSEA
Intron Amino Acid Position:
105

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.3
0.97
0.7
80.2
27.1
Major BPS
85
0.87
0.8
85.6
23
Major PPT
49.9
-0
0.9
41.5
31.5
Minor 5ss
27.5
-2.6
3
32.5
42.3
Minor BPS
70.6
0.63
1.6
75.68
40.5

Associated Gene:

Gene:
GTPBP1
Ensembl Gene ID:
ENSAPLG00000014138
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014732
53052787 - 53103727
50941
ENSAPLT00000046932
53090675 - 53104440
13766
ENSAPLT00000041611
53052787 - 53103727
50941
ENSAPLT00000027666
53090675 - 53103727
13053