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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_53100625_53103526_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
53100625 - 53103526
Intron Length:
2902

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGCCCC
5'SS Class:
major
3'SS Sequence:
GTCTCTTTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGACAT
U12 Branch Point Sequence:
TGGCTTTGACAT
Flanking Amino Acid:
GEPDVDLTSKLVMVSPTSEQ
Intron Amino Acid Position:
68

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.2
0.64
1.1
61.6
41.6
Major BPS
67.6
0.44
1.2
75
40
Major PPT
84.5
0.78
0.8
76.4
37.7
Minor 5ss
37.7
-1.4
3.3
51.2
45.5
Minor BPS
42.9
-0.4
1.7
55.72
40.3

Associated Gene:

Gene:
GTPBP1
Ensembl Gene ID:
ENSAPLG00000014138
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041611
53052787 - 53103727
50941
ENSAPLT00000027666
53090675 - 53103727
13053
ENSAPLT00000014732
53052787 - 53103727
50941
ENSAPLT00000046932
53090675 - 53104440
13766