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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_53104929_53109170_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
53104929 - 53109170
Intron Length:
4242

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGACGC
5'SS Class:
major
3'SS Sequence:
GTTCTGTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGACAA
U12 Branch Point Sequence:
ACCTGCTAGAGC
Flanking Amino Acid:
TRETLQEIFQRLSPNTMVTP
Intron Amino Acid Position:
63

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.2
0.67
1
60.8
44.4
Major BPS
58.4
0.21
1.2
67
39.8
Major PPT
82.6
0.73
0.9
76.5
37.5
Minor 5ss
30.9
-2.2
3.3
42.1
44.7
Minor BPS
40.8
-0.7
2.2
46.85
43.3

Associated Gene:

Gene:
JOSD1
Ensembl Gene ID:
ENSAPLG00000014238
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014837
53104741 - 53111476
6736