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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_53114145_53114238_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
53114145 - 53114238
Intron Length:
94

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGGCG
5'SS Class:
strong_major
3'SS Sequence:
TTCCCCTCCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCCCAC
U12 Branch Point Sequence:
CCTTCCCCACGG
Flanking Amino Acid:
LSLTVAQKVYRFSRAALWIG
Intron Amino Acid Position:
83

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
66.5
39.1
Major BPS
49.9
-0
1.3
60.3
37.5
Major PPT
74.7
0.56
0.7
73.4
24.8
Minor 5ss
24.1
-3
3.2
29.4
43.5
Minor BPS
38.7
-1
2.2
43.6
47.8

Associated Gene:

Gene:
TOMM22
Ensembl Gene ID:
ENSAPLG00000014275
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014866
53113716 - 53114574
859