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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_53116116_53116198_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
53116116 - 53116198
Intron Length:
83

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGAGCGC
5'SS Class:
major
3'SS Sequence:
TTGTTTCCTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TGGTTCTTATCG
Flanking Amino Acid:
LKFENGQWVAESGSFTGDRR
Intron Amino Acid Position:
62

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.4
0.41
1.1
53.2
40.6
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
85.5
0.8
0.8
77.9
36.6
Minor 5ss
29.1
-2.4
3.6
41.4
45.3
Minor BPS
60.3
0.18
1.7
63.5
44.5

Associated Gene:

Gene:
CBY1
Ensembl Gene ID:
ENSAPLG00000014277
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014897
53115067 - 53116540
1474