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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_53116305_53116462_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
53116305 - 53116462
Intron Length:
158

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGCCGG
5'SS Class:
major
3'SS Sequence:
CCTCTCCCTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGTAAA
U12 Branch Point Sequence:
TTACTGTAAACT
Flanking Amino Acid:
KAASLSNLHLMDRSTREIEL
Intron Amino Acid Position:
27

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.5
0.65
1
56.3
48.1
Major BPS
62.9
0.32
1.2
65.3
38.6
Major PPT
79.5
0.66
0.7
73.1
25.1
Minor 5ss
37.4
-1.4
3
44.5
44.4
Minor BPS
48.5
-0
2.3
73.66
43.1

Associated Gene:

Gene:
CBY1
Ensembl Gene ID:
ENSAPLG00000014277
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014897
53115067 - 53116540
1474