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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_53138814_53139368_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
53138814 - 53139368
Intron Length:
555

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGA|GTAAGCTTA
5'SS Class:
major
3'SS Sequence:
TCTCTCTCTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
GTGTGCTTAACC
Flanking Amino Acid:
FHISTGSQEFDKLLGGGIES
Intron Amino Acid Position:
112

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.6
0.51
1.1
68.7
39.1
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
86.8
0.83
0.7
84.7
23
Minor 5ss
48.7
-0.1
2.8
61
44.7
Minor BPS
68.3
0.56
1.8
75.04
41.5

Associated Gene:

Gene:
DMC1
Ensembl Gene ID:
ENSAPLG00000014309
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024826
53128937 - 53146289
17353
ENSAPLT00000014923
53131834 - 53146289
14456