Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_53141595_53142132_F

Intron Information:

Intron Rank:

Intron Class:

minor

Intron Phase:

Intron Coordinates:

53141595 - 53142132

Intron Length:

538

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TTT|GTATCTTTG

5'SS Class:

minor

3'SS Sequence:

TGACTAACGTCAG|C

3'SS Class:

strong_BPS

U2 Branch Point Sequence:

TCCTTAA

U12 Branch Point Sequence:

AAATCCTTAACC

Flanking Amino Acid:

KIIFIDTENTFRPDRLRDIA

Intron Amino Acid Position:

168

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

55.2

0.12

1.2

57.1

42.4

Major BPS

69.7

0.49

59.9

38.5

Major PPT

58.8

0.2

1.1

56.3

43.4

Minor 5ss

0.94

1.6

80.7

33.5

Minor BPS

81.5

0.97

1.1

79.57

34.5

Associated Gene:

Gene:

DMC1

Ensembl Gene ID:

ENSAPLG00000014309

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000024826

53128937 - 53146289

17353

ENSAPLT00000014923

53131834 - 53146289

14456