About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_53144957_53145618_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
53144957 - 53145618
Intron Length:
662

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATCAC
5'SS Class:
strong_major
3'SS Sequence:
TTTCCACCCCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCCAC
U12 Branch Point Sequence:
TTTTTTTCCACC
Flanking Amino Acid:
GELRIAKIYDSPEMPENEAT
Intron Amino Acid Position:
321

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.2
0.83
0.9
74.7
35.6
Major BPS
67.4
0.43
1.3
78.4
35.2
Major PPT
75.7
0.58
0.8
66.8
34.4
Minor 5ss
33.9
-1.8
3
43.8
43.9
Minor BPS
55
0.14
2
73.67
37.7

Associated Gene:

Gene:
DMC1
Ensembl Gene ID:
ENSAPLG00000014309
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014923
53131834 - 53146289
14456
ENSAPLT00000024826
53128937 - 53146289
17353