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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_53159769_53160129_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
53159769 - 53160129
Intron Length:
361

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTCCG
5'SS Class:
strong_major
3'SS Sequence:
CTTTGTTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTTTAAAAATC
Flanking Amino Acid:
SQPERDWVLNEFRSGKAPIL
Intron Amino Acid Position:
382

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
0.9
64.1
41.7
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
88.8
0.87
0.7
83.2
31.9
Minor 5ss
29.2
-2.4
2.7
30.6
36.2
Minor BPS
47.4
-0.2
2.1
67.86
37.9

Associated Gene:

Gene:
DDX17
Ensembl Gene ID:
ENSAPLG00000014334
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031708
53148742 - 53167276
18535