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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_53159769_53164458_F

Intron Information:

Intron Rank:
10
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
53159769 - 53164458
Intron Length:
4690

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTCCG
5'SS Class:
strong_major
3'SS Sequence:
GGCACTTCACAAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CTCTCAC
U12 Branch Point Sequence:
GGGCACTTCACA
Flanking Amino Acid:
SQPERDWVLNDVEDVKFVIN
Intron Amino Acid Position:
382

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
0.9
64.1
41.7
Major BPS
72.7
0.56
1
75
30.1
Major PPT
49.5
-0
1.1
45.9
40.5
Minor 5ss
29.2
-2.4
2.7
30.6
36.2
Minor BPS
47.1
-0.2
2
55.71
42.5

Associated Gene:

Gene:
DDX17
Ensembl Gene ID:
ENSAPLG00000014334
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014978
53148742 - 53166894
18153