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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_53169373_53171397_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
53169373 - 53171397
Intron Length:
2025

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTGGTGTC
5'SS Class:
major
3'SS Sequence:
TGTCCTTTCATAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTTAC
U12 Branch Point Sequence:
CCTTCCTTACCT
Flanking Amino Acid:
CDFFYLYVTKVLKGKKLSLP
Intron Amino Acid Position:
194

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1.2
72.1
39.4
Major BPS
68.9
0.47
1
59.6
38.6
Major PPT
76.9
0.61
0.8
72.2
32.5
Minor 5ss
32.2
-2
3.4
43.7
44.1
Minor BPS
72
0.77
1.7
83.33
44.1

Associated Gene:

Gene:
KDELR3
Ensembl Gene ID:
ENSAPLG00000014473
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015104
53169332 - 53175482
6151