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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_53171651_53171850_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
53171651 - 53171850
Intron Length:
200

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGAGA
5'SS Class:
strong_major
3'SS Sequence:
CTTGGTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTCAC
U12 Branch Point Sequence:
GCGTCCTCACCG
Flanking Amino Acid:
LENHSFTPLEILWTFSIYLE
Intron Amino Acid Position:
110

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
0.9
74.8
37
Major BPS
72.4
0.56
1
73.5
32.5
Major PPT
82.4
0.73
0.9
76.3
37.7
Minor 5ss
26.2
-2.7
2.9
30.9
42.7
Minor BPS
48.3
-0.2
2
52.1
48

Associated Gene:

Gene:
KDELR3
Ensembl Gene ID:
ENSAPLG00000014473
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015104
53169332 - 53175482
6151