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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_53178138_53179134_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
53178138 - 53179134
Intron Length:
997

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGAGTAGC
5'SS Class:
strong_major
3'SS Sequence:
CCTTCTCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTCAC
U12 Branch Point Sequence:
TGCTCCTCACGC
Flanking Amino Acid:
QRAMGSVRVNRYSIVSTEED
Intron Amino Acid Position:
13

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
0.9
72.6
38.9
Major BPS
72.4
0.56
1
73.5
32.5
Major PPT
84.8
0.78
0.7
76.5
32.1
Minor 5ss
31.1
-2.2
2.7
37.6
40
Minor BPS
46.9
-0.2
2.1
59.01
45.8

Associated Gene:

Gene:
KCNJ4
Ensembl Gene ID:
ENSAPLG00000021499
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048347
53177963 - 53181458
3496