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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_53194605_53205330_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
53194605 - 53205330
Intron Length:
10726

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGTGCG
5'SS Class:
strong_major
3'SS Sequence:
CTTCTTCCCGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTCAC
U12 Branch Point Sequence:
TTGCCACTCACT
Flanking Amino Acid:
GSGSFGDIYLEQSRRDDLES
Intron Amino Acid Position:
26

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.8
0.94
0.8
74.9
35.3
Major BPS
64.9
0.37
1
67
29.8
Major PPT
81.6
0.71
0.7
76.9
25.1
Minor 5ss
27.6
-2.6
3
32.2
42.5
Minor BPS
46
-0.2
2.3
71.62
44.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014660
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015319
53194517 - 53206519
12003