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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_53216609_53216835_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
53216609 - 53216835
Intron Length:
227

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGA|GTAAGTTTG
5'SS Class:
major
3'SS Sequence:
TTTCTCTCCTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCACAT
U12 Branch Point Sequence:
GTGTTCACATCT
Flanking Amino Acid:
AFGKYQDGDFDVTSGYLYVT
Intron Amino Acid Position:
20

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.9
0.63
1
72.5
39.9
Major BPS
77.7
0.69
1
83.3
27.7
Major PPT
86.2
0.81
0.6
85
22.5
Minor 5ss
45.1
-0.5
2.8
54.8
43.4
Minor BPS
45.4
-0.2
2
65.68
44.6

Associated Gene:

Gene:
TMEM184B
Ensembl Gene ID:
ENSAPLG00000023479
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042429
53215852 - 53221142
5291