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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_53240189_53241545_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
53240189 - 53241545
Intron Length:
1357

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACGCGCC
5'SS Class:
major
3'SS Sequence:
TCCCCCTGCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACCCAT
U12 Branch Point Sequence:
CAACCCATAGTT
Flanking Amino Acid:
LCPHSPQLALRLFQLDDEAE
Intron Amino Acid Position:
71

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.67
1
66.4
40.8
Major BPS
55.7
0.14
1.2
64.4
33.7
Major PPT
69
0.43
0.9
64.1
31
Minor 5ss
36.5
-1.5
3.5
51
45.8
Minor BPS
46.6
-0.1
1.8
60.88
42.4

Associated Gene:

Gene:
PLA2G6
Ensembl Gene ID:
ENSAPLG00000014840
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015475
53239653 - 53251371
11719
ENSAPLT00000015473
53239653 - 53251371
11719
ENSAPLT00000029873
53239653 - 53251371
11719