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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_53241762_53241847_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
53241762 - 53241847
Intron Length:
86

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTGAGGCCC
5'SS Class:
major
3'SS Sequence:
TCCTCCCTCGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTGAC
U12 Branch Point Sequence:
TGGTTGTGACCT
Flanking Amino Acid:
LEAFRHNGVLGCVNNPDAGE
Intron Amino Acid Position:
143

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.6
0.56
1
57.4
41.8
Major BPS
71.3
0.53
1.2
63.1
44.5
Major PPT
78
0.63
0.7
72.5
25.6
Minor 5ss
26.1
-2.7
3
26
36.4
Minor BPS
44.1
-0.3
2.3
64.76
45.7

Associated Gene:

Gene:
PLA2G6
Ensembl Gene ID:
ENSAPLG00000014840
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029873
53239653 - 53251371
11719
ENSAPLT00000015475
53239653 - 53251371
11719
ENSAPLT00000015473
53239653 - 53251371
11719