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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_53242032_53242434_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
53242032 - 53242434
Intron Length:
403

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGGGAGCG
5'SS Class:
major
3'SS Sequence:
TTCCTTTTCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTGCCTTTGATT
Flanking Amino Acid:
VRGHNPQVVEILGRTPTVVL
Intron Amino Acid Position:
205

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.9
0.59
1
59.5
39.8
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
86.1
0.81
0.7
79.7
32.2
Minor 5ss
23.9
-3
3.3
29.6
43.4
Minor BPS
69
0.68
1.2
80.03
36.4

Associated Gene:

Gene:
PLA2G6
Ensembl Gene ID:
ENSAPLG00000014840
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015475
53239653 - 53251371
11719
ENSAPLT00000015473
53239653 - 53251371
11719
ENSAPLT00000029873
53239653 - 53251371
11719