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Intron Name: Anas_platyrhynchos_platyrhynchos_1_53242623_53243297_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

53242623 - 53243297

Intron Length:

675

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GGG|GTAAGGAAC

5'SS Class:

strong_major

3'SS Sequence:

TTGCCTTCACCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATCTCAA

U12 Branch Point Sequence:

AATTCCTCATCT

Flanking Amino Acid:

IHTALKYSHKGCAQAILEVD

Intron Amino Acid Position:

267

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.4

0.74

38.2

Major BPS

76.9

0.67

0.8

77.7

26.1

Major PPT

73.3

0.52

0.9

66.8

39.3

Minor 5ss

32.1

-2

3.1

34.7

41.5

Minor BPS

62.6

0.47

1.8

80.44

40.9

Associated Gene:

Gene:

PLA2G6

Ensembl Gene ID:

ENSAPLG00000014840

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000015473

53239653 - 53251371

11719

ENSAPLT00000029873

53239653 - 53251371

11719

ENSAPLT00000015475

53239653 - 53251371

11719