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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_53244397_53244512_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
53244397 - 53244512
Intron Length:
116

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGTCG
5'SS Class:
strong_major
3'SS Sequence:
CCTTGTCTCCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAC
U12 Branch Point Sequence:
TTTGACTGAGCT
Flanking Amino Acid:
GNTPLHLAMKHDRLDMIKAI
Intron Amino Acid Position:
361

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
69.1
38.1
Major BPS
86.5
0.91
0.8
77.4
37.4
Major PPT
73
0.52
0.8
65.2
36.3
Minor 5ss
31.6
-2.1
3.2
38.5
46.7
Minor BPS
51.7
0.13
2
78.18
43.6

Associated Gene:

Gene:
PLA2G6
Ensembl Gene ID:
ENSAPLG00000014840
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015475
53239653 - 53251371
11719
ENSAPLT00000015473
53239653 - 53251371
11719
ENSAPLT00000029873
53239653 - 53251371
11719