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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_53247585_53247755_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
53247585 - 53247755
Intron Length:
171

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTCCT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTTCCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAC
U12 Branch Point Sequence:
TTACCCTTAGCT
Flanking Amino Acid:
NTKMTDVQKPKVIVTGTLCD
Intron Amino Acid Position:
583

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
0.9
78.2
36.3
Major BPS
77.8
0.69
0.9
69.4
37.3
Major PPT
86.6
0.82
0.7
80.5
31.5
Minor 5ss
38.6
-1.3
3
52.1
38.3
Minor BPS
72.6
0.79
1.5
87.01
38

Associated Gene:

Gene:
PLA2G6
Ensembl Gene ID:
ENSAPLG00000014840
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015475
53239653 - 53251371
11719
ENSAPLT00000015473
53239653 - 53251371
11719
ENSAPLT00000029873
53239653 - 53251371
11719