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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_53248236_53248344_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
53248236 - 53248344
Intron Length:
109

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGGAA
5'SS Class:
strong_major
3'SS Sequence:
CTTTTGTCCGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATAAAT
U12 Branch Point Sequence:
GTTCCTGCAAAT
Flanking Amino Acid:
HEYNKSLIKKGQRQKVRKLG
Intron Amino Acid Position:
681

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
0.9
74.4
30.8
Major BPS
65.7
0.39
1
71.3
30.3
Major PPT
81.5
0.71
0.8
76.6
32
Minor 5ss
23.1
-3.1
3.2
28
44
Minor BPS
45.3
-0.2
2.2
67.95
42.5

Associated Gene:

Gene:
PLA2G6
Ensembl Gene ID:
ENSAPLG00000014840
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015475
53239653 - 53251371
11719
ENSAPLT00000015473
53239653 - 53251371
11719
ENSAPLT00000029873
53239653 - 53251371
11719