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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_53249660_53250178_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
53249660 - 53250178
Intron Length:
519

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAAGAGCT
5'SS Class:
strong_major
3'SS Sequence:
TCGGTGTCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGATGAT
U12 Branch Point Sequence:
GTGATGATATCT
Flanking Amino Acid:
WCEMTDIPYFRLSPQLHTDV
Intron Amino Acid Position:
761

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
1
72.9
36.6
Major BPS
69.5
0.48
1.2
59.7
46.7
Major PPT
67.8
0.4
1
61.2
40.1
Minor 5ss
33.6
-1.9
3.5
49.7
46.1
Minor BPS
39.4
-0.7
2.3
57.83
44.8

Associated Gene:

Gene:
PLA2G6
Ensembl Gene ID:
ENSAPLG00000014840
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015475
53239653 - 53251371
11719
ENSAPLT00000015473
53239653 - 53251371
11719