About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_53252890_53252931_F

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
53252890 - 53252931
Intron Length:
42

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGTACCTG
5'SS Class:
weak_major
3'SS Sequence:
TTTCCATGGTGAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTCCAT
U12 Branch Point Sequence:
GAACAACTACCT
Flanking Amino Acid:
EQFNPALENLWAAEVYFKAI
Intron Amino Acid Position:
45

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
58.3
0.2
1
47.4
42.5
Major BPS
77.3
0.68
1.2
86.7
32.3
Major PPT
49
-0
1.8
62.2
43.4
Minor 5ss
41.6
-0.9
3.1
52.1
47
Minor BPS
37.6
-0.8
2
52.21
40.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030608
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048418
53250576 - 53253340
2765